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<Unnamed>.* |
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Constants | ||
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protected static final double |
big |
4.503599627370496E15 |
protected static final double |
biginv |
2.220446049250313E-16 |
protected static final double |
LOGPI |
1.1447298858494002 |
protected static final double |
MACHEP |
1.1102230246251565E-16 |
protected static final double |
MAXGAM |
171.6243769563027 |
protected static final double |
MAXLOG |
709.782712893384 |
protected static final double |
MINLOG |
-745.1332191019412 |
protected static final double |
SQRTH |
0.7071067811865476 |
protected static final double |
SQTPI |
2.5066282746310007 |
Forward_alt | ||
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final int |
BI |
14 |
final int |
PO |
13 |
final int |
U |
12 |
Forward_std | ||
---|---|---|
final int |
BI |
14 |
final int |
PO |
13 |
final int |
U |
12 |
HMM | ||
---|---|---|
public static final int |
AMINO |
1 |
public static final int |
AMINO_DOUBLE_GAP |
4 |
public static final int |
AMINO_GAP |
3 |
public static final int |
CLUSTER |
100 |
public static final int |
DELETE |
4 |
public static final int |
DNA |
2 |
public static final int |
END |
99 |
public static final int |
ENDNODE |
2 |
public static final int |
EVEN |
0 |
public static final int |
FORWARD_ALT |
104 |
public static final int |
FORWARD_STD |
103 |
public static final int |
HIGHWAY |
107 |
public static final int |
INSERT |
3 |
public static final int |
LOCKED |
5 |
public static final int |
LOCKED_EVEN |
4 |
public static final int |
LOCKED_MANUAL |
5 |
public static final int |
MANUAL |
3 |
public static final int |
NOTYPE |
-1 |
public static final int |
OWN |
100 |
public static final int |
PROFILE7 |
101 |
public static final int |
PROFILE9 |
105 |
public static final int |
RANDOM |
2 |
public static final int |
SILENT |
2 |
public static final int |
SINGLELOOP |
102 |
public static final int |
SINGLENODE |
0 |
public static final int |
STANDARD |
1 |
public static final int |
START |
0 |
public static final int |
STARTNODE |
1 |
public static final int |
U_TURN |
106 |
public static final int |
ZERO |
1 |
Profile7 | ||
---|---|---|
final double |
INIT_A_OPEN_PROB |
0.99 |
final double |
INIT_DD_PROB |
0.8 |
final double |
INIT_DM_PROB |
0.2 |
final double |
INIT_EXIT_PROB |
0.025 |
final double |
INIT_II_PROB |
0.8 |
final double |
INIT_IM_PROB |
0.2 |
final double |
INIT_MD_PROB |
0.025 |
final double |
INIT_MI_PROB |
0.025 |
final double |
INIT_MM_PROB |
0.925 |
final double |
INIT_NA_CLOSE_PROB |
0.01 |
final double |
INIT_NA_LOOP_PROB |
0.99 |
final double |
INIT_NA_OPEN_PROB |
0.01 |
Profile9 | ||
---|---|---|
final double |
INIT_A_OPEN_PROB |
0.99 |
final double |
INIT_DD_PROB |
0.8 |
final double |
INIT_DI_PROB |
0.01 |
final double |
INIT_DM_PROB |
0.19 |
final double |
INIT_EXIT_PROB |
0.025 |
final double |
INIT_ID_PROB |
0.01 |
final double |
INIT_II_PROB |
0.8 |
final double |
INIT_IM_PROB |
0.19 |
final double |
INIT_MD_PROB |
0.025 |
final double |
INIT_MI_PROB |
0.025 |
final double |
INIT_MM_PROB |
0.925 |
final double |
INIT_NA_CLOSE_PROB |
0.01 |
final double |
INIT_NA_LOOP_PROB |
0.99 |
final double |
INIT_NA_OPEN_PROB |
0.01 |
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